Colocalization Testing Across Datasets

Version release: 1.6.0 alpha

Select coordinate system
Select files to upload

You may upload up to 3 files:
  • .txt or .tsv (required): tab-separated primary summary statistics (eg. GWAS)
  • .ld (optional): PLINK-generated LD matrix -- must have the same number of SNPs as primary file
  • .html (optional): Secondary datasets to test colocalization. Each data table must be preceded by an <h3> title tag describing the table
File size limit is 500 MB for all 3 files

Select Simple Sum Colocalization Region
Leave blank for default (+/- 0.1Mbp from the lead SNP)
Select Populations for LD
Select GTEx eQTL Data to Render
Please allow sufficient time for analysis if selecting many tissues and genes.
Analyses may take >30 minutes when selecting many tissue-gene pairs.
Select GTEx (V7) Tissues

Select Genes (enter coordinates above to populate)

By hitting submit, you understand that you are uploading your dataset to a public server