Select coordinate system
Select files to upload
You may upload up to 3 files:
.txt or .tsv (required): tab-separated primary summary statistics (eg. GWAS)
.ld (optional): PLINK-generated LD matrix -- must have the same number of SNPs as primary file
.html (optional): Secondary datasets to test colocalization. Each data table must be preceded by an <h3> title tag describing the table
Refer to the
on how to generate the HTML file.
You may use the
You may use provided
as a guide to formatting your files.
File size limit is 500 MB for all 3 files
Use marker ID column to infer variant position and alleles
Add required inputs for COLOC2
Lead Marker Name:
Select Simple Sum Colocalization Region
Leave blank for default (+/- 0.1Mbp from the lead SNP)
Select Populations for LD
Select GTEx eQTL Data to Render
Please allow sufficient time for analysis if selecting many tissues and genes.
Analyses may take >30 minutes when selecting many tissue-gene pairs.
Select GTEx (V7) Tissues
Select Genes (enter coordinates above to populate)
Stage one set-based p-value threshold
By hitting submit, you understand that you are uploading your dataset to a public server